Masked statistics measurement 3dSee full documentation

StatsResult =

statsMaskMsr3d (inImg,inMaskImg)

Detailed Description

measure of common statistics indicators in a 3d image (mean, max, etc.) intersected with a mask

For each 3d data of the input image, this algorithm measures common statistic indicators (number of pixels, minimum, maximum, mean and standard deviation) on the set of pixels in the input image whose associated pixel in the mask image has a value that equals to 1.

Like Statistics measurement 3d, two wrappers can be called : the statsMaskMsr3d wrapper is only used to compute the statistic measurements on the whole grey level 3d volume, whereas the multiSlice_statsMaskMsr3d wrapper must be used for more complex data (channel of a color volume, frame in a 3d sequence, or for each channel of each volume of a 3d sequence).

See ipsdk::imaproc::attr::StatsResult for a complete list of image statistic measurements processed by this algorithm.

Example of Python code :

Example imports

import PyIPSDK
import PyIPSDK.IPSDKIPLBinarization as bin
import PyIPSDK.IPSDKIPLGlobalMeasure as glbmsr

Code Example

    # opening of input image
    inImg = PyIPSDK.loadTiffImageFile(inputImgPath)
    
    # Mask generation
    maskImg = bin.thresholdImg(inImg, 64, 192)
    
    # statistics measurement
    statsMsrResult = glbmsr.statsMaskMsr3d(inImg, maskImg)
    
    # retrieve measurement results
    mean = statsMsrResult.mean
    print("Mean value for image is " + str(mean))

Example of C++ code :

Example informations

Header file

#include <IPSDKIPL/IPSDKIPLGlobalMeasure/Processor/StatsMaskMsr3d/StatsMaskMsr3d.h>

Code Example

    // ------------ Calculation on a mono-slice grey level image ------------ //
    // Compute statistics on input image
    StatsResultPtr pStatsRes = statsMaskMsr3d(pInImg, pMaskImg);
    
    // Retrieve the results as scalar variables
    const ipUInt64 uPixCount  = pStatsRes->getValue<StatsResult::PixCount>();
    const ipReal64 fSum = pStatsRes->getValue<StatsResult::Sum>();
    const ipReal64 fMean = pStatsRes->getValue<StatsResult::Mean>();
    const ipReal64 fStdDev = pStatsRes->getValue<StatsResult::StdDev>();
    const ipReal64 fMin = pStatsRes->getValue<StatsResult::Min>();
    const ipReal64 fMax = pStatsRes->getValue<StatsResult::Max>();

    // --------------- Calculation on a multi-slice RGB image -------------- //
    // Compute statistics on input image
    PlanIndexedStatsResultPtr pStatsRes_multiSlice = multiSlice_statsMaskMsr3d(pInImg_multiSlice, pMaskImg_multiSlice);
    
    // Retrieve the results as scalar variables for the channel 1 (Green color)
    const ipUInt64 c = 1;
    const ipUInt64 uPixCount_multiSlice = pStatsRes_multiSlice->getValue(0, c, 0).getNode<StatsResult::PixCount>().getValue();
    const ipReal64 fSum_multiSlice = pStatsRes_multiSlice->getValue(0, c, 0).getNode<StatsResult::Sum>().getValue();
    const ipReal64 fMean_multiSlice = pStatsRes_multiSlice->getValue(0, c, 0).getNode<StatsResult::Mean>().getValue();
    const ipReal64 fStdDev_multiSlice = pStatsRes_multiSlice->getValue(0, c, 0).getNode<StatsResult::StdDev>().getValue();
    const ipReal64 fMin_multiSlice = pStatsRes_multiSlice->getValue(0, c, 0).getNode<StatsResult::Min>().getValue();
    const ipReal64 fMax_multiSlice = pStatsRes_multiSlice->getValue(0, c, 0).getNode<StatsResult::Max>().getValue();